| |
cluster |
total length [bp] |
number of reads |
Genome proportion[%] |
cumulative GP [%] |
Repeat Masker |
Domain hits |
Repeat Masker
custom library |
Layout |
Portion of similarity hits to other clusters[%] |
Outside reads with similarity [%] |
| 1
|
CL1
|
2849490
|
31661
|
3.1100
|
3.1
|
LTR.Copia (2hits, 0.00379%)
Low_complexity (2hits, 0.00186%)
Simple_repeat (1hits, 0.00109%)
LTR.Gypsy (1hits, 0.000983%)
rRNA (1hits, 0.000948%)
|
|
DNA.DCRE20.DCRE20 (29288hits, 90.4%)
DNA.CentromereRepeat (2755hits, 7.91%)
DNA.Plastid_36501.37500 (1hits, 0.00158%)
DNA.Plastid_21001.22000 (1hits, 0.0014%)
DNA.Mitochondrion_11501.125......
|
|
3.8e+01
|
90.960
|
| 2
|
CL2
|
2586870
|
28743
|
2.8200
|
5.9
|
LINE.L1 (3hits, 0.00499%)
Low_complexity (4hits, 0.0036%)
LTR.Gypsy (2hits, 0.0029%)
DNA.CMC.EnSpm (1hits, 0.00155%)
|
|
DNA.DCRE20.DCRE20 (27411hits, 93.2%)
DNA.CentromereRepeat (1700hits, 5.11%)
DNA.CentromereMotif (9hits, 0.0123%)
DNA.1Mb2 (1hits, 0.00317%)
DNA.3Mb1 (2hits, 0.0024%)
DNA.Plastid_147......
|
|
4.9e+01
|
109.600
|
| 3
|
CL3
|
1222470
|
13583
|
1.3300
|
7.3
|
LTR.Copia (6990hits, 45.2%)
Simple_repeat (15hits, 0.0438%)
Low_complexity (11hits, 0.0321%)
RC.Helitron (1hits, 0.00654%)
LTR.Gypsy (1hits, 0.00466%)
|
Ty1-RT Ty1/copia Maximus/SIRE (2540 hits 18.7%)
Ty1-INT Ty1/copia Maximus/SIRE (1458 hits 10.7%)
Ty1-RH Ty1/copia Maximus/SIRE (1296 hits 9.54%)
Ty1-INT Ty1/copia Ivana/Oryco (152 hits 1.12%)
Ty1-RT T......
|
DNA.DCRE2.DCRE2 (1189hits, 8.01%)
DNA.DCRE15.DCRE15 (309hits, 1.94%)
DNA.DCRE5.DCRE5 (314hits, 1.7%)
DNA.DCRE10.DCRE10 (202hits, 1.15%)
DNA.DCRE21.DCRE21 (124hits, 0.742%)
DNA.3Mb1 (12hits......
|
|
3.6e-01
|
2.510
|
| 4
|
CL4
|
913680
|
10152
|
0.9970
|
8.3
|
LTR.Copia (5217hits, 45.8%)
Low_complexity (341hits, 1.64%)
DNA.hAT.Tag1 (1hits, 0.00766%)
DNA.PIF.Harbinger (1hits, 0.007%)
Simple_repeat (1hits, 0.00241%)
|
Ty1-RT Ty1/copia Maximus/SIRE (2320 hits 22.9%)
Ty1-RH Ty1/copia Maximus/SIRE (1187 hits 11.7%)
Ty1-INT Ty1/copia Maximus/SIRE (932 hits 9.18%)
Ty1-RT Ty1/copia Ivana/Oryco (118 hits 1.16%)
Ty1-INT Ty......
|
DNA.DCRE10.DCRE10 (2219hits, 20.1%)
DNA.DCRE5.DCRE5 (255hits, 2.29%)
DNA.DCRE21.DCRE21 (288hits, 2.26%)
DNA.DCRE18.DCRE18 (193hits, 1.47%)
DNA.7Mb1 (1hits, 0.00514%)
DNA.Mitochondrion_1620......
|
|
3.8e-01
|
2.719
|
| 5
|
CL5
|
858420
|
9538
|
0.9360
|
9.2
|
Low_complexity (270hits, 1.72%)
LTR.Copia (21hits, 0.167%)
Simple_repeat (3hits, 0.0085%)
|
Ty1-INT Ty1/copia Maximus/SIRE (2 hits 0.021%)
Ty1-GAG Ty1/copia Tork (1 hits 0.0105%)
|
DNA.DCRE4.DCRE4 (1584hits, 15.6%)
DNA.DCRE19.DCRE19 (1498hits, 14.8%)
DNA.DCRE18.DCRE18 (1296hits, 12.8%)
DNA.DCRE22.DCRE22 (967hits, 9.61%)
DNA.DCRE10.DCRE10 (3hits, 0.016......
|
|
1.2e-01
|
0.524
|
| 6
|
CL6
|
805140
|
8946
|
0.8780
|
10.1
|
LTR.Copia (63hits, 0.467%)
DNA.MULE.MuDR (8hits, 0.0631%)
Low_complexity (7hits, 0.025%)
DNA (3hits, 0.0101%)
Simple_repeat (1hits, 0.00335%)
|
Ty1-GAG Ty1/copia Maximus/SIRE (162 hits 1.81%)
Ty1-GAG Ty1/copia Ivana/Oryco (17 hits 0.19%)
|
DNA.DCRE12.DCRE12 (1936hits, 20.3%)
DNA.3Mb1 (1857hits, 19.4%)
DNA.DCRE7.DCRE7 (1279hits, 13.7%)
DNA.DCRE3.DCRE3 (545hits, 5.63%)
DNA.DCRE13.DCRE13 (491hits, 5.26%)<......
|
|
2.7e-01
|
1.252
|
| 7
|
CL7
|
671400
|
7460
|
0.7320
|
10.8
|
Simple_repeat (172hits, 1.27%)
Low_complexity (88hits, 0.534%)
DNA.PIF.Harbinger (2hits, 0.0197%)
LTR.Copia (3hits, 0.0192%)
DNA.MULE.MuDR (1hits, 0.00923%)
rRNA (1hits, 0.00462%)
|
|
DNA.DCRE25.DCRE25 (1074hits, 12.6%)
DNA.DCRE26.DCRE26 (506hits, 6.24%)
DNA.DCRE22.DCRE22 (141hits, 1.65%)
DNA.DCRE10.DCRE10 (1hits, 0.007%)
DNA.DCRE16.DCRE16 (1hits, 0.00611%)
DNA.7......
|
|
2.3e-01
|
0.684
|
| 8
|
CL8
|
611100
|
6790
|
0.6670
|
11.5
|
LTR.Copia (1hits, 0.00655%)
Low_complexity (1hits, 0.00327%)
|
Ty1-INT Ty1/copia Maximus/SIRE (1 hits 0.0147%)
|
DNA.DCRE21.DCRE21 (1hits, 0.00671%)
DNA.Plastid_83501.84500 (1hits, 0.00589%)
DNA.Plastid_113001.114000 (1hits, 0.00589%)
DNA.Plastid_137501.138500 (1hits, 0.00556%)
DNA.Plastid_147001.148000 (1hits, ......
|
|
1.1e-04
|
0.088
|
| 9
|
CL9
|
599580
|
6662
|
0.6540
|
12.1
|
LTR.Copia (728hits, 8.32%)
LTR.Gypsy (8hits, 0.0817%)
|
Ty1-INT Ty1/copia Maximus/SIRE (683 hits 10.3%)
Ty1-PROT Ty1/copia Maximus/SIRE (162 hits 2.43%)
Ty1-INT Ty1/copia Ivana/Oryco (97 hits 1.46%)
Ty1-PROT Ty1/copia Ivana/Oryco (47 hits 0.705%)
Ty1-PROT ......
|
DNA.DCRE17.DCRE17 (2813hits, 39.8%)
DNA.DCRE1.DCRE1 (1389hits, 19.6%)
DNA.DCRE21.DCRE21 (756hits, 10.5%)
DNA.DCRE23.DCRE23 (681hits, 8.63%)
DNA.DCRE5.DCRE5 (566hits, 6.8......
|
|
5.4e-01
|
2.732
|
| 10
|
CL10
|
588600
|
6540
|
0.6420
|
12.8
|
rRNA (1hits, 0.00544%)
|
|
DNA.Mitochondrion_162001.163000 (160hits, 1.45%)
DNA.Mitochondrion_21501.22500 (38hits, 0.307%)
DNA.Mitochondrion_277001.278000 (30hits, 0.286%)
DNA.Mitochondrion_65001.66000 (47hits, 0.256%)
DNA.Mito......
|
|
0.0e+00
|
0.000
|
|
