Cluster CL8
Cluster summary
| Number.of.reads |
Number.of.pairs |
Density |
| 6790
|
5618657
|
0.24
|
|
Summary of RepeatMasker hits
| |
class.fammily |
class |
family |
hits |
hits[%] |
content |
Mean_Score |
| 3
|
LTR/Copia
|
LTR
|
Copia
|
1
|
0.015
|
0.0065
|
239
|
| 4
|
Low_complexity
|
Low_complexity
|
Low_complexity
|
1
|
0.015
|
0.0033
|
21
|
|
Summary of RepeatMasker custom library hits
| |
class.fammily |
class |
family |
hits |
hits[%] |
content |
Mean_Score |
| 3
|
DNA/DCRE21/DCRE21
|
DNA
|
DCRE21
|
1
|
0.015
|
0.0067
|
280
|
| 4
|
DNA/Plastid_113001-114000
|
DNA
|
Plastid_113001-114000
|
1
|
0.015
|
0.0059
|
315
|
| 5
|
DNA/Plastid_83501-84500
|
DNA
|
Plastid_83501-84500
|
1
|
0.015
|
0.0059
|
345
|
| 6
|
DNA/Plastid_137501-138500
|
DNA
|
Plastid_137501-138500
|
1
|
0.015
|
0.0056
|
329
|
| 7
|
DNA/Plastid_147001-148000
|
DNA
|
Plastid_147001-148000
|
1
|
0.015
|
0.0054
|
304
|
| 8
|
DNA/Plastid_80501-81500
|
DNA
|
Plastid_80501-81500
|
1
|
0.015
|
0.0052
|
295
|
| 9
|
DNA/CentromereRepeat
|
DNA
|
CentromereRepeat
|
1
|
0.015
|
0.0051
|
285
|
| 10
|
DNA/Plastid_134501-135500
|
DNA
|
Plastid_134501-135500
|
1
|
0.015
|
0.0049
|
275
|
| 11
|
DNA/Plastid_57501-58500
|
DNA
|
Plastid_57501-58500
|
1
|
0.015
|
0.0047
|
231
|
|
Summary of TE domain hits
Number of similarity hits for individual sequences
| |
Domain |
ID |
Type |
Lineage |
Hits |
MeanScore |
| 1
|
Ty1-INT
|
Wicker_Echidne_Os_cons
|
Ty1/copia
|
Maximus/SIRE
|
1
|
31
|
|
Layout of the cluster
Connected component
Neighborhood of the cluster
Explore interactive graph - 1st order neighbors
Explore interactive graph - 2nd order neighbors
Clusters with similarity hits
| |
cluster |
number of similarity hits |
| 1
|
CL98
|
6
|
|
reads with similarity to all other neighboring clusters
no mates information available