Cluster CL7
Cluster summary
| Number.of.reads |
Number.of.pairs |
Density |
| 7460
|
118796
|
0.0043
|
|
Summary of RepeatMasker hits
| |
class.fammily |
class |
family |
hits |
hits[%] |
content |
Mean_Score |
| 3
|
Simple_repeat
|
Simple_repeat
|
Simple_repeat
|
172
|
2.310
|
1.2733
|
224
|
| 4
|
Low_complexity
|
Low_complexity
|
Low_complexity
|
88
|
1.180
|
0.5344
|
31
|
| 5
|
DNA/PIF-Harbinger
|
DNA
|
PIF-Harbinger
|
2
|
0.027
|
0.0197
|
244
|
| 6
|
LTR/Copia
|
LTR
|
Copia
|
3
|
0.040
|
0.0192
|
262
|
| 7
|
DNA/MULE-MuDR
|
DNA
|
MULE-MuDR
|
1
|
0.013
|
0.0092
|
251
|
| 8
|
rRNA
|
rRNA
|
rRNA
|
1
|
0.013
|
0.0046
|
252
|
|
Summary of RepeatMasker custom library hits
| |
class.fammily |
class |
family |
hits |
hits[%] |
content |
Mean_Score |
| 3
|
DNA/DCRE25/DCRE25
|
DNA
|
DCRE25
|
1074
|
14.400
|
12.5585
|
550
|
| 4
|
DNA/DCRE26/DCRE26
|
DNA
|
DCRE26
|
506
|
6.780
|
6.2411
|
560
|
| 5
|
DNA/DCRE22/DCRE22
|
DNA
|
DCRE22
|
141
|
1.890
|
1.6457
|
344
|
| 6
|
DNA/DCRE10/DCRE10
|
DNA
|
DCRE10
|
1
|
0.013
|
0.0070
|
381
|
| 7
|
DNA/DCRE16/DCRE16
|
DNA
|
DCRE16
|
1
|
0.013
|
0.0061
|
274
|
| 8
|
DNA/7Mb1
|
DNA
|
7Mb1
|
1
|
0.013
|
0.0051
|
279
|
| 9
|
DNA/DCRE20/DCRE20
|
DNA
|
DCRE20
|
1
|
0.013
|
0.0042
|
231
|
| 10
|
DNA/15Mb1
|
DNA
|
15Mb1
|
1
|
0.013
|
0.0039
|
228
|
|
Summary of TE domain hits
No similarity hits detected!
Layout of the cluster
Connected component
Neighborhood of the cluster
Explore interactive graph - 1st order neighbors
Explore interactive graph - 2nd order neighbors
Clusters with similarity hits
| |
cluster |
number of similarity hits |
| 1
|
CL11
|
264
|
| 2
|
CL103
|
5
|
|
reads with similarity to all other neighboring clusters
no mates information available