Cluster CL1
Cluster summary
| Number.of.reads |
Number.of.pairs |
Density |
| 31661
|
1.9e+08
|
0.38
|
|
Summary of RepeatMasker hits
| |
class.fammily |
class |
family |
hits |
hits[%] |
content |
Mean_Score |
| 3
|
LTR/Copia
|
LTR
|
Copia
|
2
|
0.0063
|
0.00379
|
228
|
| 4
|
Low_complexity
|
Low_complexity
|
Low_complexity
|
2
|
0.0063
|
0.00186
|
28
|
| 5
|
Simple_repeat
|
Simple_repeat
|
Simple_repeat
|
1
|
0.0032
|
0.00109
|
288
|
| 6
|
LTR/Gypsy
|
LTR
|
Gypsy
|
1
|
0.0032
|
0.00098
|
229
|
| 7
|
rRNA
|
rRNA
|
rRNA
|
1
|
0.0032
|
0.00095
|
233
|
|
Summary of RepeatMasker custom library hits
| |
class.fammily |
class |
family |
hits |
hits[%] |
content |
Mean_Score |
| 3
|
DNA/DCRE20/DCRE20
|
DNA
|
DCRE20
|
29288
|
92.5000
|
9.0e+01
|
728
|
| 4
|
DNA/CentromereRepeat
|
DNA
|
CentromereRepeat
|
2755
|
8.7000
|
7.9e+00
|
642
|
| 5
|
DNA/Plastid_36501-37500
|
DNA
|
Plastid_36501-37500
|
1
|
0.0032
|
1.6e-03
|
347
|
| 6
|
DNA/Plastid_21001-22000
|
DNA
|
Plastid_21001-22000
|
1
|
0.0032
|
1.4e-03
|
346
|
| 7
|
DNA/Mitochondrion_11501-12500
|
DNA
|
Mitochondrion_11501-12500
|
1
|
0.0032
|
1.4e-03
|
344
|
| 8
|
DNA/DCRE19/DCRE19
|
DNA
|
DCRE19
|
1
|
0.0032
|
1.3e-03
|
265
|
| 9
|
DNA/Plastid_53001-54000
|
DNA
|
Plastid_53001-54000
|
1
|
0.0032
|
1.3e-03
|
300
|
| 10
|
DNA/Mitochondrion_278501-279500
|
DNA
|
Mitochondrion_278501-279500
|
1
|
0.0032
|
1.2e-03
|
330
|
| 11
|
DNA/DCRE8/DCRE8
|
DNA
|
DCRE8
|
1
|
0.0032
|
1.2e-03
|
268
|
| 12
|
DNA/DCRE21/DCRE21
|
DNA
|
DCRE21
|
1
|
0.0032
|
1.1e-03
|
274
|
| 13
|
DNA/Mitochondrion_10501-11500
|
DNA
|
Mitochondrion_10501-11500
|
1
|
0.0032
|
1.1e-03
|
283
|
| 14
|
DNA/Plastid_125001-126000
|
DNA
|
Plastid_125001-126000
|
1
|
0.0032
|
1.1e-03
|
286
|
| 15
|
DNA/Plastid_150501-151500
|
DNA
|
Plastid_150501-151500
|
1
|
0.0032
|
1.1e-03
|
289
|
| 16
|
DNA/Mitochondrion_46001-47000
|
DNA
|
Mitochondrion_46001-47000
|
1
|
0.0032
|
1.1e-03
|
262
|
| 17
|
DNA/CentromereMotif
|
DNA
|
CentromereMotif
|
1
|
0.0032
|
1.0e-03
|
239
|
| 18
|
DNA/Plastid_58501-59500
|
DNA
|
Plastid_58501-59500
|
1
|
0.0032
|
9.8e-04
|
260
|
| 19
|
DNA/3Mb1
|
DNA
|
3Mb1
|
1
|
0.0032
|
8.8e-04
|
240
|
|
Summary of TE domain hits
No similarity hits detected!
Layout of the cluster
Graph too large, edges not shown!
Connected component
Neighborhood of the cluster
Explore interactive graph - 1st order neighbors
Explore interactive graph - 2nd order neighbors
Clusters with similarity hits
| |
cluster |
number of similarity hits |
| 1
|
CL2
|
72417714
|
| 2
|
CL176
|
8683
|
| 3
|
CL98
|
510
|
| 4
|
CL2491
|
25
|
| 5
|
CL14812
|
4
|
| 6
|
CL16
|
2
|
| 7
|
CL526
|
1
|
| 8
|
CL839
|
1
|
|
reads with similarity to all other neighboring clusters
no mates information available