Repeat Explorer
- Graph-based clustering and characterization of repetitive sequences in
next-generation sequencing data
- Only low genome coverage needed, so you can analyze large genomes
with a single sequencing run e.g.Onion, Garlic
- Implemented in Galaxy, so easy to use. You just need to sign up for a free account.
http://repeatexplorer.org/
- Input is raw sequencing reads (equal length preferred)
- Output example