Spidey

• NCBI Program to align mRNA and genomic sequences
• Easy to use web interface http://www.ncbi.nlm.nih.gov/spidey/
• Input screen
• Output screen
• Can install locally - but text output, no pictures

Example: Daucus carota leucoanthocyanidin dioxygenase (LDOX):

>Carrot Genomic sequence
ccagtcaagcaagttaactactttccattttcagtttggtcaagtgggagttcaacttac
cacgtgcaccctcctttcctatttccatcaccctcaacatgtccattacctttataaata
aattttcacctcaagcttcaatttcagaaataaacacagagcacatactaaatcacgatg
gtcgcgactaccttagaatctccaagagtagagaccctggctgggagtggcattcagcta
atcccgaaagaatacgtgaggccgaaagatgaacttgtcagcatcaccaacattttcgag
gaggaaaagagtgatgaaggccctcaggtgcccacagtcgacatagctgatattctgtct
gatgacagagctgtcagggagaaatgctatgaaagaattaaggatgctgccgtggactgg
ggagtcatgcaccttgttaaccacgggatctcaaatgagctcatggatcgtgttagagtg
gctggacaggcgttttttgctgaaccaattggcgagaaggagaagtatgcaaatgatccg
ggcactggaatgattcaagggtatggaagcaagctagccaacaatgccagcggccagctt
gagtgggaagactatttcttccaccttgtttaccccgaagagaaagctgatttgtctatt
tggcctaagaaaccacaggactacatgtaagtcgccacaaactgataaaaactttcaact
atggattatagtagatagcatgacatgaatttgtttttgtatatattgcagtccggcaac
aagggagtacgcgaaggagttaagaggcctcgcgacaaagttactatctgcattatctat
aggactgggacttgaagaaggaaggctagaaaaagaagttggcggaatggaagagctaat
actccagatgaagatcaattactacccgaagtgtcctcaacctgaactggctctcggtgt
tgaagctcacactgatgtgagtgcactcagtttcatactccataatatggttcctgggct
acaactcttctatggaggcaagtgggtgaccgctaaatgtgttccagactctattatagt
acacattggggacacacttgaaattttaagcaatggcaagtataaaagcattcttcacag
gggacttgtgaacaaggagaaagttagaatttcgtgggctgttttctgtgagcctcctaa
agagaagattattctaaagccactgccagagacagtaactgaggctgagccaccgctctt
tccaccccgtacctttgctcagcatatggcacacaagctgttcaggaagagccaggaagc
tattgatgactcgaaaaaggttcagccacaggaacaaaataatgctgaaactgatattcc
tcagccagaagaacaacaaaaaaccgtagaaagtaaacctcagaaaattgaaatattaaa
gcctggagaagaggcatctacttctccataatttgaaatttctcagctgctggaacagaa
taactatcctctaaaagtagatatccgaatccttctatcaagagttgatttgtcacaggc
ttcagacattactatctcagttgccacatgtttgaaatatgttaaataaccttgttgcaa
tatattcaagtattggtttctataataaattatgagaatatccgtaaaatcagttactct
atgctgtgcatgaaatcataacctggaacagtatcaggataatcccaactagagaatatt
attcaccctaaattggtttgagcgtcacttgttatcaaataactctatttcaagcttgtg
cagaaaaacaacagagcgaaaaaaatgtaaaatctccgtgctgatataacatggtattgt
ttaaatgatgttctggacaattttaactttgttatcgatgtagattagttattgtctgta
agatatagaagattactttttcatataggttccacctctgagaggaagggctgctttgca
aagaatgcatccaagttacc

AF184273
AF184274