This web site, https://www.vcru.wisc.edu/sdata, contains data from the laboratory of Philipp W. Simon, USDA-ARS Vegetable Crops Research Unit [Click here for our web page]
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USDA ARS VCRU Data Server This web site, https://www.vcru.wisc.edu/sdata, contains data from the laboratory of Philipp W. Simon, USDA-ARS Vegetable Crops Research Unit [Click here for our web page] |
Return to B493×QAL map main page
The data used in making this map might be in the following files:
The most complete single file for 493×QAL, a consolidated copy with ALL data for ALL markers up to Darek's map, is here
Text files with the linkage map data:
(From the publication)
Genotype data for the putative carotenoid structural genes was added to the map data generated by Santos (2001), which consisted mostly of AFLP markers. MAPMAKER 3.0 (Lander et al. 1987) was used for map construction. Dominant markers from a single parent linked in coupling were used in conjunction with all codominant markers. The two-point command was used to establish linkage groups at a LOD of 4.0. One or two codominant markers per group were assigned as anchor loci in the initialization file. Markers were assigned to linkage groups using the assign command. Three-point analysis was then performed for each linkage group followed by the order command to develop a framework map. Remaining markers were added using the place command. Markers that still remained unplaced were added using the try command. The linkage group numbering of Santos (2001) and Santos and Simon (2002, 2004) was retained.
Marker Information for AFLPs and other previously mapped markers is here