Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Saturday, 12-Nov-2016 12:44:26 CST

Installation notes for Velvet version 1.2.10

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Prerequisites

pdflatex
$ sudo apt-get install texlive-latex-base

Installation

  1. $ cd /programinstallers/
  2. $ git clone git://github.com/dzerbino/velvet.git
  3. $ cd velvet
  4. $ make 'OPENMP=1' 'MAXKMERLENGTH=99'
  5. Installation
    $ mkdir /usr/local/bin/velvet
  6. $ cp -puvr velveth velvetg contrib /usr/local/bin/velvet/
  7. $ cd ..
  8. Add to default PATH for all users. Note that programs in the contrib directory will not be in the default PATH.
    $ sudo nano /etc/profile
    …
    PATH="$PATH:/usr/local/bin/velvet"
    …
  9. Cleanup
    See oases instructions for cleanup