This page was last updated on Friday, 06-Feb-2015 17:49:00 CST

Installation notes for SOAP GapCloser v1.12-r6, 2013-01-11

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Prerequisites

/usr/local/bin/SOAP was created during installation of SOAPdenovo and is in the default PATH

Installation

1. $ ver="1.12-r6"
2. $ cd /programinstallers/
3. $ wget -N http://downloads.sourceforge.net/project/soapdenovo2/GapCloser/src/r6/GapCloser-src-v$ver.tgz
4. $ tar -zxvf GapCloser-src-v$ver.tgz
5. $ cd v$ver
6. $ make
7. Manual install is necessary
   $ cp -puv Release/GapCloser /usr/local/bin/SOAP/
8. Copy manual to local web page
   $ cp -puv GapCloser_Manual.pdf ../web/soap/
9. $ cd ..
10. Cleanup
    $ rm v$ver -rf