This page was last updated on Thursday, 18-Dec-2014 14:48:07 CST

Installation notes for SOAPdenovo version 2.04 Release r240, 2013-07-08 (precompiled binary file timestamp)

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Prerequisites

Installation

1. $ ver="r240"
2. $ cd /programinstallers/
3. $ wget -N http://downloads.sourceforge.net/project/soapdenovo2/SOAPdenovo2/bin/$ver/SOAPdenovo2-bin-LINUX-generic-$ver.tgz
4. $ tar -zxvf SOAPdenovo2-bin-LINUX-generic-$ver.tgz
   

   SOAPdenovo2-bin-LINUX-generic-r240/
   SOAPdenovo2-bin-LINUX-generic-r240/update.log
   SOAPdenovo2-bin-LINUX-generic-r240/LICENSE
   SOAPdenovo2-bin-LINUX-generic-r240/MANUAL
   SOAPdenovo2-bin-LINUX-generic-r240/SOAPdenovo-127mer
   SOAPdenovo2-bin-LINUX-generic-r240/VERSION
   SOAPdenovo2-bin-LINUX-generic-r240/SOAPdenovo-63mer

5. Manual installation
   $ mkdir /usr/local/bin/SOAP
6. $ cp -puv SOAPdenovo2-bin-LINUX-generic-$ver/SOAPdenovo-{127,63}mer /usr/local/bin/SOAP/
7. Add to default PATH for all users
   $ sudo nano /etc/profile
   …
   PATH="$PATH:/usr/local/bin/SOAP"
   …
8. Copy MANUAL file for local web page
   $ cp -puv SOAPdenovo2-bin-LINUX-generic-$ver/MANUAL web/soap/SOAPdenovo2MANUAL.txt
9. Cleanup
   $ rm SOAPdenovo2-bin-LINUX-generic-$ver -rf