This page was last updated on Tuesday, 25-Aug-2020 11:08:32 CDT
Installation notes for GBS-SNP-CROP version 3.0
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Prerequisites
- Java 7 or higher - We used Java 8
- Trimmomatic v.0.33 (Bolger et al., 2014)
- PEAR v.0.96 (Zhang et al., 2014)
- Vsearch v2.6.2 (Rognes et al., 2016)
- BWA aligner v.0.7.12 (Li & Durbin, 2009)
- SAMTools v.1.2 (Li et al., 2009)
- sudo cpan Parallel::ForkManager
Installation
- $ ver="3.0"
- $ cd /programinstallers/nas/
- $ git clone https://github.com/halelab/GBS-SNP-CROP.git
- $ sudo cp -puv GBS-SNP-CROP/GBS-SNP-CROP-scripts/v.$ver/* /usr/local/bin/