Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Monday, 19-Mar-2018 21:39:32 CDT

Installation notes for VSEARCH version 2.7.1

Home Page

Prerequisites

Installation

  1. $ ver="2.7.1"
  2. $ cd /programinstallers/nas/
  3. $ wget -N https://github.com/torognes/vsearch/releases/download/v${ver}/vsearch-${ver}-linux-x86_64.tar.gz
  4. $ cd /programinstallers/
  5. $ tar -zxvf nas/vsearch-${ver}-linux-x86_64.tar.gz
  6. $ cd vsearch-${ver}-linux-x86_64
  7. Manual installation
    $ sudo mv bin/vsearch /usr/local/bin/
  8. $ gzip man/vsearch.1 && sudo mv man/vsearch.1.gz /usr/share/man/man1/ && sudo chmod +r /usr/share/man/man1/vsearch.1.gz
  9. Copy documentation to our local web page
    $ mkdir /programinstallers/programs/vsearch/
  10. $ mv doc/vsearch_manual.pdf /programinstallers/programs/vsearch/
  11. $ mv README.md /programinstallers/programs/vsearch/README.md.txt
  12. Cleanup
    $ cd ..
  13. $ rm vsearch-${ver}-linux-x86_64 -rf