This web site, https://www.vcru.wisc.edu/sdata, contains data from the laboratory of Philipp W. Simon, USDA-ARS Vegetable Crops Research Unit [Click here for our web page]
|
USDA ARS VCRU Data Server This web site, https://www.vcru.wisc.edu/sdata, contains data from the laboratory of Philipp W. Simon, USDA-ARS Vegetable Crops Research Unit [Click here for our web page] |
This map was published in
Characterization of the Meloidogyne javanica resistance locus employing
molecular markers and isolation of candidate disease resistance loci in the carrot
(Daucus carota L.) genome
by Leonardo Silva Boiteux, Ph.D. Thesis, 2000, University of Wisconsin-Madison
Chapter 8: Construction of an RAPD-based genomic map of carrot with anchor sequence-tagged
site markers corresponding to microsatellite repeats, retrotransposon
elements, promoter-like and putative coding regions, Tables 8.1 through 8.24
Details about individual markers are available by clicking on any of the markers on the map, or by going directly to the marker information page
RAPD linkage groups of the female parent ‘Brasilia-1252’ estimated via
analysis of 112 F2 individuals from the cross ‘Brasilia-1252’ × ‘6274B’. Genetic
distances between adjacent markers were estimated using Kosambi function.
(Figures 8.1 through 8.12)
Linkage Operon Approximate Genetic
Group Primer size (bp) distance Total
1 OP-C6 1100 24.8
1 OP-U17 1500 9.2
1 OP-C9 1600 23.9
1 OP-F14 1050 --- 57.9
2 OP-A4 720 8.3
2 OP-B11 1300 16.5
2 OP-AA4 1500 12.7
2 OP-C16 1300 2.1
2 OP-C6 2070 12.0
2 OP-C8 1200 19.8
2 OP-Y7 300 40.1
2 OP-V3 850 --- 111.4
3 OP-C6 2000 12.3
3 OP-C20 850 4.2
3 OP-D2 1250 17.6
3 OP-E9 1500 --- 34.1cM
4 OP-H4 1050 19.0
4 OP-C20 980 9.2
4 OP-H14 900 16.9
4 OP-J12 1600 10.2
4 OP-Q18 750 18.3
4 OP-N5 1000 52.6
4 OP-N14 750 6.4
4 OP-B11 850 4.5
4 OP-D8 1300 3.1
4 OP-A17 1800 5.5
4 OP-C8 1700 --- 145.7cM
5 OP-J4 1050 9.4
5 OP-E7 950 30.8
5 OP-F12 350 6.1
5 OP-D8 1600 1.4
5 OP-H14 1100 3.3
5 OP-W12 300 8.0
5 OP-W2 420 19.5
5 OP-B12 800 --- 78.4cM
6 OP-H4 1900 15.6
6 OP-P4 700 5.3
6 OP-K8 550 22.6
6 OP-J10 800 5.6
6 OP-X16 650 4.3
6 OP-H8 1000 17.0
6 OP-F6 400 10.6
6 OP-K14 1100 --- 81.0cM
7 OP-F12 750 9.5
7 OP-A4 300 26.4
7 OP-H20 1400 4.0
7 Mj-1 --- 5.1
7 OP-D2 750 --- 45.0cM
8 OP-H11 400 18.8
8 OP-D8 720 23.8
8 OP-J4 1000 --- 42.6cM
9 OP-C8 1300 6.0
9 OP-C9 2100 --- 6.0cM
10 OP-D2 920 22.6
10 OP-K4 900 --- 22.6cM
11 OP-F8 1600 7.4
11 OP-K14 1400 --- 7.4
12 OP-K10 850 4.4
12 OP-L12 800 --- 4.4cM
RAPD linkage groups of the male parent ‘6274B’ estimated via analysis
of 112 F2 individuals from the cross ‘Brasilia-1252’ × ‘6274B’. Genetic distances
between adjacent markers were estimated using Kosambi function.
(Figures 8.13 through 8.24)
Linkage Operon Approximate Genetic
Group Primer size (bp) distance Total
1 OP-H12 2070 23.1
1 OP-K14 1400 6.2
1 OP-C8 1250 25.9
1 OP-N2 1150 --- 55.2cM
2 OP-A17 1500 8.1
2 OP-Q5 700 17.5
2 OP-F8 1300 --- 25.6
3 OP-K8 1100 4.7
3 OP-P2 750 28.8
3 OP-H11 1850 3.9
3 OP-B12 1100 1.8
3 OP-A17 1200 10.0
3 OP-H11 2100 10.0
3 OP-A17 1850 52.0
3 mj-1(susceptible locus) --- 0.0
3 OP-Q1 850 0.9
3 OP-J12 2200 4.5
3 OP-H11 1600 0.0
3 OP-F6 1200 5.6
3 OP-E7 1500 3.2
3 OP-D8 650 4.9
3 OP-D2 1030 --- 130.4cM
4 OP-Q13 400 28.1
4 OP-W19 1200 16.2
4 OP-V13 580 4.2
4 OP-F8 1500 13.5
4 OP-K3 900 --- 62.0cM
5 OP-D8 800 6.1
5 OP-F12 850 17.0
5 OP-S7 1000 15.8
5 OP-T6 1300 15.4
5 OP-D2 1150 --- 54.3cM
6 OP-J6 800 18.7
6 OP-O12 600 19.1
6 OP-H20 790 30.8
6 OP-C10 900 10.7
6 OP-H9 1200 --- 79.3cM
7 OP-I3 1100 25.0
7 OP-E14 700 3.2
7 OP-H4 1100 22.9
7 OP-K14 700 --- 51.1cM
8 OP-E14 900 5.8
8 OP-K10 1200 21.1
8 OP-N10 1100 --- 26.9cM
9 OP-W17 800 15.3
9 OP-F6 1420 --- 15.3cM
10 OP-Q15 700 3.2
10 OP-B7 800 --- 3.2cM
11 OP-B17 700 12.0
11 OP-I7 290 --- 12.0cM
12 OP-H2 1250 23.9
12 OP-H8 550 --- 23.9cM