You must specify an input file of a supported type.
pstacks 1.35
pstacks -t file_type -f file_path [-o path] [-i id] [-m min_cov] [-p num_threads] [-h]
  t: input file Type. Supported types: bowtie, sam, or bam.
  f: input file path.
  o: output path to write results.
  i: SQL ID to insert into the output to identify this sample.
  m: minimum depth of coverage to report a stack (default 1).
  p: enable parallel execution with num_threads threads.
  h: display this help messsage.
  Model options:
    --model_type <type>: either 'snp' (default), 'bounded', or 'fixed'
    For the SNP or Bounded SNP model:
      --alpha <num>: chi square significance level required to call a heterozygote or homozygote, either 0.1, 0.05 (default), 0.01, or 0.001.
    For the Bounded SNP model:
      --bound_low <num>: lower bound for epsilon, the error rate, between 0 and 1.0 (default 0).
      --bound_high <num>: upper bound for epsilon, the error rate, between 0 and 1.0 (default 1).
    For the Fixed model:
      --bc_err_freq <num>: specify the barcode error frequency, between 0 and 1.0.