usage: iprscan -cli [-email ] [-appl ...] [-nocrc] [-altjobs] [-seqtype p|n] [-trlen ] [-trtable ] [-iprlookup] [-goterms] -i [-o ] -i Your sequence file (mandatory). -o The output file where to write results (optional), default is STDOUT. -email Submitter email address (required for non-interactive). -appl Application(s) to run (optional), default is all. Possible values (dependent on set-up): blastprodom fprintscan hamap hmmpfam hmmpir hmmpanther hmmtigr hmmsmart superfamily gene3d patternscan profilescan seg coils [tmhmm] [signalp] -nocrc Don't perform CRC64 check, default is on. -altjobs Launch jobs alternatively, chunk after chunk. Default is off. -seqtype Sequence type: n for DNA/RNA, p for protein (default). -trlen Transcript length threshold (20-150). -trtable
Codon table number. -goterms Show GO terms if iprlookup option is also given. -iprlookup Switch on the InterPro lookup for results. -format Output results format (raw, txt, html, xml(default), ebixml(EBI header on top of xml), gff) -verbose Print messages during run