This page was last updated on Monday, 07-Sep-2015 10:54:03 CDT

Installation notes for Zorro version 2.2 - April 14, 2011

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Prerequisites

• AMOS
• MUMmer
• bowtie
• Perl module Bio::SeqIO

Installation

1. $ ver="2.2"
2. $ cd /programinstallers/
3. $ wget -N http://www.lge.ibi.unicamp.br/zorro/downloads/Zorro$ver.tar.gz
4. $ tar -zxvf Zorro$ver.tar.gz
5. Fix bug line 234 of zorro.pl, change -K to -k
   system("kmer-cov-plot -k $file < $assembly1 > $outfile 2> /dev/null");
6. Manual installation
   $ cp -puv Zorro$ver/{split_at_Ns.pl,zorro.pl} /usr/local/bin/
7. Copy documentation to local web page
   $ cp -puv Zorro$ver/DOC web/zorro/DOC.txt
8. $ cp -puv Zorro$ver/README web/zorro/README.txt
9. Cleanup
   $ rm Zorro$ver -rf