Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Wednesday, 07-Oct-2020 18:54:07 CDT

Installation notes for XPCLR

Prerequisites

Installation ver. a555c44 July 16, 2020

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  1. $ sudo pip3 install scikit-allel
  2. $ sudo pip3 install scipy
  3. $ sudo pip3 install pandas
  4. $ cd /programinstallers/
  5. $ git clone https://github.com/hardingnj/xpclr.git
  6. $ cd xpclr
  7. $ sudo python3 setup.py install

Installation ver. 1.0 Aug 18, 2010

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  1. $ cd /programinstallers/
  2. $ wget -N https://reich.hms.harvard.edu/sites/reich.hms.harvard.edu/files/inline-files/XPCLR.tar
  3. $ tar -xvf XPCLR.tar
  4. $ cp -puv XPCLR/bin/XPCLR /usr/local/bin/