Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Monday, 23-Nov-2015 16:11:47 CST

Installation notes for TransDecoder version 2.0.1

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Prerequisites

CD-HIT, however version 4.6.1 of CD-HIT is included with TransDecoder

Installation

  1. $ ver="2.0.1"
  2. $ cd /programinstallers/
  3. $ wget -N https://github.com/TransDecoder/TransDecoder/archive/$ver.tar.gz
  4. $ mv $ver.tar.gz TransDecoder-$ver.tar.gz
  5. $ cd /usr/local/bin/
  6. $ tar -zxvf /programinstallers/TransDecoder-$ver.tar.gz
  7. Version-independent symlink
    $ ln -s TransDecoder-$ver TransDecoder
  8. $ cd TransDecoder
  9. To compile the included version of CD-HIT
    $ make
  10. To add to default PATH
    $ sudo nano /etc/profile

    PATH="$PATH:/usr/local/bin/TransDecoder"