This page was last updated on Monday, 14-Nov-2016 12:19:32 CST

Installation notes for tmhmm version 2.0c

Web interface

Prerequisites

None

Installation

1. Download through web page + email http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?tmhmm and save in /programinstallers
2. $ ver="2.0c"
3. $ cd /usr/local/bin/
4. $ tar -zxvf /programinstallers/tmhmm-$ver.Linux.tar.gz
5. Make a version-independent symlink
   $ ln -s tmhmm-$ver tmhmm
6. $ cd tmhmm
7. "Insert the correct path for perl 5.x in the first line of the scripts bin/tmhmm and bin/tmhmmformat.pl (if not /usr/local/bin/perl)."
   I have a symlink /usr/local/bin/perl -> /usr/bin/perl so don't need to modify them
8. "Make sure you have an executable version of decodeanhmm in the bin directory."
   $ cd bin && ln -s decodeanhmm.Linux_x86_64 decodeanhmm && cd -
9. Add to default PATH for all users
   $ sudo nano /etc/profile
   …
   PATH="$PATH:/usr/local/bin/tmhmm/bin"
   …