This page was last updated on Thursday, 06-Mar-2014 09:48:36 CST

Installation notes for TIGRA version 0.3.7 - 6/29/2013

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According to this thread, this is the successor to TIGRA-SV which will no longer be maintained.

Prerequisites

• Samtools development version
  Note that version 0.1.19 is incompatible, see the install notes for TIGRA-SV for details

Installation

1. $ cd /programinstallers/
2. $ wget -N http://odin.mdacc.tmc.edu/~kchen3/tigra/tigra-0.3.7.tar.gz
3. $ tar -zxvf tigra-0.3.7.tar.gz
4. $ cd tigra-0.3.7
5. Modify Makefile by changing all references for the samtools libraries to /usr/lib/samtools-0.1.18
   i.e. replace /Users/kchen3/pkg/samtools/samtools-0.1.6/ (2 occurrences) and /Users/kchen3/samtools/samtools-0.1.6/ (6 occurrences) with /usr/lib/samtools-0.1.18/
6. I also changed the install location in the Makefile, change PREFIX=/usr to PREFIX=/usr/local
7. $ make
8. $ sudo make install
   install -D -m 755 tigra-sv /usr/local/bin/tigra-sv
9. Cleanup
   $ cd ..
10. $ rm tigra-0.3.7 -rf