This page was last updated on Wednesday, 22-Jan-2014 16:11:26 CST

Installation notes for SHRiMP version 2.2.3

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Prerequisites

None

Installation

1. $ cd /programinstallers/
2. $ wget -N http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.lx26.x86_64.tar.gz
3. $ cd /usr/local/bin
4. $ tar -zxvf /programinstallers/SHRiMP_2_2_3.lx26.x86_64.tar.gz
5. $ rm SHRiMP (needed only if upgrading, delete old symlink)
6. Create a version-independent symlink to make upgrading easier later
   $ ln -s SHRiMP_2_2_3 SHRiMP
7. Documentation
   $ cp -puv SHRiMP/README SHRiMP/README.SHRiMP132 SHRiMP/SPLITTING_AND_MERGING SHRiMP/SCORES_AND_PROBABILITES /U:/simonlabweb/bioinformatics/programs/shrimp/
8. For initial install, but not needed if upgrading
   $ sudo nano /etc/profile
   Insert these lines
   PATH="$PATH:/usr/local/bin/SHRiMP/bin:/usr/local/bin/SHRiMP/utils"
   export SHRIMP_FOLDER="/usr/local/bin/SHRiMP"