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Installation notes for Sequin version 13.05 Jan 30, 2014

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Prerequisites

• For this error
  /usr/local/bin/sequin/sequin: error while loading shared libraries: libjpeg.so.62: cannot open shared object file: No such file or directory
  do this
  $ sudo apt-get install libjpeg62
• For this error (Ubuntu 16.04 only)
  /usr/local/bin/sequin/sequin: error while loading shared libraries: libXp.so.6: cannot open shared object file: No such file or directory
  install the Ubuntu 15.10 version (reference)
  1. Package comes from http://www.ubuntuupdates.org/package/core/vivid/main/base/libxp6
     $ wget -N http://security.ubuntu.com/ubuntu/pool/main/libx/libxp/libxp6_1.0.2-2_amd64.deb
  2. $ sudo dpkg -i libxp6_1.0.2-2_amd64.deb

Installation

1. $ ver="13.05"
2. $ cd /programinstallers/
3. $ wget -N ftp://ftp.ncbi.nih.gov/sequin/CURRENT/sequin.linux-x86_64.tar.gz
4. $ cd /usr/local/bin
5. $ mkdir sequin.$ver
6. Only if upgrading, remove old symlink
   $ rm sequin
7. Make version-independent symlink
   $ ln -s sequin.$ver sequin
8. $ cd sequin
9. $ tar -zxvf /programinstallers/sequin.linux-x86_64.tar.gz
10. Make a program launcher
    $ sudo nano /usr/share/applications/Bioinformatics/Sequin.desktop
    

    #!/usr/bin/env xdg-open
    
    [Desktop Entry]
    Version=1.0
    Type=Application
    Terminal=false
    Exec=/usr/local/bin/sequin/sequin
    Name=Sequin
    Comment=NCBI Sequin Submission Program
    Icon=/
    Categories=Bioinformatics;Education;Science