This page was last updated on Friday, 23-Dec-2016 10:49:55 CST

Installation notes for seqtk version 5e1e8dbd50 1.0-r82-dirty 2015-03-24

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Prerequisites

None

Installation

1. $ cd /programinstallers/
2. $ git clone https://github.com/lh3/seqtk.git
3. $ cd seqtk
4. $ make

   gcc -g -Wall -O2 -Wno-unused-function seqtk.c -o seqtk -lz -lm
   seqtk.c: In function ‘stk_comp’:
   seqtk.c:386:16: warning: variable ‘lc’ set but not used [-Wunused-but-set-variable]
       int la, lb, lc, na, nb, nc, cnt[11];
                   ^
   gcc -g -Wall -O2 -Wno-unused-function ksw.c trimadap.c -o trimadap -lz -lm
   

5. Manual installation
   $ cp -puv seqtk trimadap /usr/local/bin/
6. Cleanup
   $ cd ..
7. $ rm seqtk -rf