Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Friday, 29-Jun-2018 11:14:32 CDT

Installation notes for R version xxx

Home Page

Prerequisites

None

R Installation

  1. $ sudo apt-get install r-base r-base-dev
  2. To update from version 3.0.3 to 3.1.2 on Ubuntu 14.04
    http://stackoverflow.com/questions/27272149/update-r-version-from-3-0-3-to-3-1-2
  3. To update on Ubuntu 16.04
    https://www.r-bloggers.com/how-to-install-r-on-linux-ubuntu-16-04-xenial-xerus/

RStudio Server Installation

Reference instructions and download

  1. $ cd /programinstallers
  2. $ sudo apt-get install gdebi-core
  3. $ wget https://download2.rstudio.org/rstudio-server-1.1.453-amd64.deb
  4. $ sudo gdebi rstudio-server-1.1.453-amd64.deb
  5. Add to iptables:
    # RStudio Server
    -A RH-Firewall-1-INPUT -p tcp -m tcp --dport 8787 -j ACCEPT
  6. Our user accounts are < 1000, so we need to change this
    $ sudo nano /etc/rstudio/rserver.conf
    # Server Configuration File
    auth-minimum-user-id=500
  7. $ sudo rstudio-server restart
  8. Connect with web browser to port 8787 http://server.name:8787