Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

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Installation notes for PipMaker and MultiPipMaker version 2011-08-12-01

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Prerequisites

Perl modules Net::DNS::Resolver MIME::Lite

sendmail

Installation

  1. $ ver="2011-08-12-01"
  2. $ cd /programinstallers/
  3. $ wget -N http://pipmaker.bx.psu.edu/dist/pipmaker-$ver.tar.bz2
  4. $ tar -jxvf /programinstallers/pipmaker-$ver.tar.bz2
  5. $ cd pipmaker-$ver
  6. Edit the file config
  7. $ make all
  8. $ sudo make install
  9. $ sudo sed -i 's|cgi-bin|×/pipmaker|' /usr/local/pipmaker/pipmaker/www/{index.html,mpm-instr.html,pip-instr2.html,pip-instr3.html,pipmaker2.html,pipmaker3.html,pipmaker.html}
  10. $ ln -s /usr/local/pipmaker/pipmaker/www /var/www/html/pipmaker
  11. $ sudo /usr/local/pipmaker/pipmaker/bin/start-pipserver
    /usr/local/pipmaker/pipmaker/bin/init-pipserver: line 12: /usr/local/pipmaker/pipmaker/spool/log: No such file or directory
  12. $ sudo mkdir /usr/local/pipmaker/pipmaker/spool
  13. $ sudo mkdir /usr/local/pipmaker/pipmaker/spool/{new,work,tmp,trash,err}
  14. $ sudo chown -R www-data:www-data /usr/local/pipmaker/pipmaker/spool
  15. $ sudo nano /usr/local/pipmaker/pipmaker/bin/start-pipserver

    exec $piphome/bin/pipenv init-pipserver $piphome/pipserver
  16. $ sudo -u root /usr/local/pipmaker/pipmaker/bin/start-pipserver &
  17. $ cat /usr/local/pipmaker/pipmaker/spool/log
    Empty unless error occurred
  18. $ sudo mkdir /usr/local/pipmaker/pipmaker/etc
  19. $ sudo touch /usr/local/pipmaker/pipmaker/etc/{deny,noquota}
  20. Add to top of each of pipmaker dopip dopip3 dompip
    $ PATH="$PIPHOME/bin:/usr/local/pipmaker/bin:$PATH"
  21. $