Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Wednesday, 14-Dec-2016 11:03:19 CST

Installation notes for PHYLIP version 3.696

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Prerequisites

Installation

  1. $ ver="3.696"
  2. $ cd /programinstallers/
  3. $ wget -N http://evolution.gs.washington.edu/phylip/download/phylip-$ver.tar.gz
  4. Register at http://evolution.gs.washington.edu/phylip/register.html
  5. $ tar -zxvf phylip-$ver.tar.gz
  6. $ cd phylip-$ver/src
  7. $ mv Makefile.unx Makefile
  8. $ make all
  9. $ sudo make install
  10. That installs to ../exe/, now install for all users
    $ sudo mv ../exe /usr/local/bin/phylip
  11. Add to default PATH for all users
    $ sudo nano /etc/profile

    PATH="$PATH:/usr/local/bin/phylip"
  12. Cleanup
    $ cd /programinstallers
  13. $ rm phylip-$ver -rf