This page was last updated on Wednesday, 22-Jan-2014 16:11:25 CST
Installation notes for PBJelly version 12.9.14
Home Page
Prerequisites
SMRT Analysis software (I have a virtual Ubuntu 10.04 machine for this)
Installation
- $ cd /programinstallers/
- $ wget -N http://downloads.sourceforge.net/project/pb-jelly/PBJelly_12.9.14.tgz
- $ cd /usr/local/bin
- $ tar -zxvf PBJelly_12.9.14.tgz
- $ ln -s PBJelly_12.9.14 PBJelly
- $ cd PBJelly_12.9.14
- $ nano exportPaths.sh
...
export JELLYPATH=/usr/local/bin/PBJelly
...
SEYMOUR_HOME="/opt/smrtanalysis"
...
- $ nano ~/.bashrc
...
source /usr/local/bin/PBJelly/exportPaths.sh
- Log out and back in to test
$ echo $PATH
should end with :/usr/local/bin/PBJelly/
- Make sure we are using the right python
$ which python
should show /opt/smrtanalysis/redist/python2.7/bin/python