Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

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Installation notes for MELT version 2.0.2 - Aug 30, 2016

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Prerequisites

java ≥ 1.7

Bowtie2

Installation

  1. $ ver="2.0.2"
  2. $ cd /programinstallers/
  3. Download from http://melt.igs.umaryland.edu/downloads.php
  4. $ tar -zxvf MELTv*ver.tar.gz
  5. $ cd MELTv$ver
  6. $ chmod +r+x MELT.jar
  7. $ sudo cp -puv MELT.jar /usr/local/bin/
  8. Make a wrapper
    $ cd /usr/local/bin
  9. $ sudo nano MELT 
    #!/bin/bash
java -jar /usr/local/bin/MELT.jar $@
  10. $ sudo chmod +x MELT
  11. $ cd /programinstallers
  12. Cleanup
    $ rm MELTv$ver -rf