This page was last updated on Thursday, 26-Jan-2017 13:03:52 CST

Installation notes for MEGA2 version 4.9.1

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Prerequisites

• nplplot
  1. $ sudo R
  2. $ install.packages('nplplot')

Installation

1. $ ver="4.9.1"
2. $ cd /programinstallers/
3. Register and download manually
4. $ tar -zxvf mega2_v${ver}_src.tar.gz
5. $ cd mega2_v${ver}_src
6. $ sudo ./install.sh

   OS linux
   
   Not recompiling mega2. Using mega2_bin/mega2_v4.9.1_linux_ubuntu.16.04.1x
   
   Checking for python
   OK: Found /usr/bin/python
   Checking for gawk/nawk/awk
   OK: Found /usr/bin/gawk
   Checking for perl
   OK: Found /usr/local/bin/perl
   Checking for R
   OK: Found /usr/bin/R
   Checking for nplplot library installed in R
   OK: Found nplplot version 4.5
   Checking for csh
   OK: Found /bin/csh
   
   Enter full path for mega2 and helper scripts to be installed.
   You will need write access.
   [default /usr/local/bin]: 
   Installing  mega2_bin/mega2_v4.9.1_linux_ubuntu.16.04.1x for linux version 16.04.1
   Installed perl script Rsimwalk2.pl in /usr/local/bin
   Installed perl script Rmerlin_regress.pl in /usr/local/bin
   Installed perl script Rallegro.pl in /usr/local/bin
   Installed perl script make_gen_table.pl in /usr/local/bin
   Installed perl script make_hwe_table.pl in /usr/local/bin
   Installed perl script merlin2sw2.pl in /usr/local/bin
   Installed perl script mega2log2html.pl in /usr/local/bin
   Installed l2a.py in /usr/local/bin
   Installed Rmerlin.py in /usr/local/bin
   
   Please remember to also install the 'nplplot' and 'genetics' R packages into R if necessary
   Please consult the Mega2 documentation for details

7. Cleanup
   $ cd /programinstallers ; rm mega2_v${ver}_src -rf
8. A redundant copy of the program with the version name included can be removed
   $ ls /usr/local/bin/mega2* ; sudo rm -i /usr/local/bin/mega2_v*_linux