Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Wednesday, 22-Jan-2014 16:11:25 CST

Installation notes for MCScan version 0.8

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Prerequisites

None

Installation

  1. $ cd /programinstallers/
  2. $ git clone https://github.com/tanghaibao/mcscan.git
  3. $ cd mcscan
  4. $ make
  5. $ cp -puv mcscan /usr/local/bin/
  6. Rename the helper script to avoid possible conflicts
    $ cp -puv filter_blast.py /usr/local/bin/mcscan_filter_blast.py
  7. Next two commands for web page documentation:
    $ mkdir /U:/simonlabweb/bioinformatics/programs/mcscan
  8. $ cp -puv README.rst /U:/simonlabweb/bioinformatics/programs/mcscan/README.rst.txt
  9. $ cd ..
  10. $ rm mcscan -rf