Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Friday, 24-Mar-2017 11:47:18 CDT

Installation notes for LASTZ version 1.04.00 - March 12, 2017

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Prerequisites

Installation

  1. $ ver="1.04.00"
  2. $ cd /programinstallers/
  3. $ wget -N http://www.bx.psu.edu/~rsharris/lastz/lastz-$ver.tar.gz
  4. $ tar -zxvf lastz-$ver.tar.gz
  5. $ cd lastz-distrib-$ver/src
  6. $ make
  7. $ make test
    The lack of any output from this command indicates success
  8. Optional 32-bit version
    $ make lastz_32
  9. Documented installation method didn't work, so instead install manually
    $ export LASTZ_INSTALL=/usr/local/bin && sudo make install
    $ sudo cp -puv lastz lastz_D lastz_32 /usr/local/bin/ 
    ‘lastz’ -> ‘/usr/local/bin/lastz’
‘lastz_D’ -> ‘/usr/local/bin/lastz_D’
‘lastz_32’ -> ‘/usr/local/bin/lastz_32’
  10. Cleanup
    $ cd /programinstallers; rm lastz-distrib-$ver -rf