This page was last updated on Monday, 09-Aug-2021 13:21:02 CDT
Installation notes for InterProScan version 5.3-46.0
Home Page
Home Page 2021
Install instructions
InterProScan documentation 2021
Prerequisites
If this error
java.io.IOException: Cannot run program "bin/coils/ncoils": error=2, No such file or directory
see https://code.google.com/p/interproscan/issues/detail?id=23
we have to install ncoils ourselves, and link the non-working version to that.
(Do this after installing InterProScan!)
- $ sudo apt-get install ncoils
- $ rm /usr/local/interproscan/interproscan/bin/coils/ncoils
- $ ln -s /usr/bin/ncoils /usr/local/interproscan/interproscan/bin/coils/ncoils
Installation
- $ ver="5.3-46.0"
- $ panver="8.1"
- $ cd /programinstallers/
- $ wget -N ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/$ver/interproscan-${ver}-64-bit.tar.gz.md5
- $ wget -N ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/$ver/interproscan-${ver}-64-bit.tar.gz
- Download takes a long time. Confirm correctness
$ md5sum -c interproscan-${ver}-64-bit.tar.gz.md5
- Install to one of the data drives because of size
$ cd /xxdatay
- $ tar -pzxvf /programinstallers/interproscan-${ver}-64-bit.tar.gz
- Make a version-independent symlink
$ cd /usr/local/bin ; ln -s /pdata1/interproscan-$ver interproscan
- Initial setup
$ cd /usr/local/bin/interproscan ; python3 initial_setup.py
If you instead run interproscan.sh, it also calls this and sets things up
- $ cd interproscan/data
Download panther database Not needed since 5.52-86.0
$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-$panver.tar.gz.md5$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-$panver.tar.gz$ md5sum -c panther-data-$panver.tar.gz.md5$ tar -pxvzf panther-data-$panver.tar.gz- Entire install takes about 24 GBytes if the panther-data-$panver.tar.gz file is deleted
- Add to PATH
$ sudo nano /etc/profile
…
PATH="$PATH:/usr/local/bin/interproscan"
…
- Test
$ /usr/local/bin/interproscan.sh
