This page was last updated on Friday, 22-Dec-2023 14:29:47 CST

Installation notes for HMMER version 3.1b1

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Prerequisites

None

Installation

1. $ ver="3.1b1"
2. $ cd /programinstallers/
3. $ wget -N http://selab.janelia.org/software/hmmer3/$ver/hmmer-${ver}-linux-intel-x86_64.tar.gz
4. $ wget -N http://eddylab.org/software/hmmer/hmmer-$ver.tar.gz
5. $ tar -zxvf hmmer-${ver}-linux-intel-x86_64.tar.gz
6. $ cd hmmer-${ver}-linux-intel-x86_64
7. $ ./configure
8. $ make
9. $ make check
   …
   All 260 exercises at level <= 2 passed.
   …
10. $ sudo make install
    …
    for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan hmmpgmd hmmc2; do \
      /usr/bin/install -c -m 0755 $file /usr/local/bin/ ;\
    done
    …
11. $ cd easel
12. $ sudo make install
    …
    for file in esl-afetch esl-alimanip esl-alimap esl-alimask esl-alimerge esl-alipid esl-alistat esl-cluster esl-compalign esl-compstruct esl-construct esl-histplot esl-mask esl-reformat esl-selectn esl-seqrange esl-seqstat esl-sfetch esl-shuffle esl-ssdraw esl-stranslate esl-weight ; do \
      /usr/bin/install -c -m 0755 $file /usr/local/bin/ ;\
    done
    …
13. Cleanup
    $ cd ../..
14. $ rm hmmer-${ver}-linux-intel-x86_64 -rf