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Installation notes for Harry Plotter version 10-5-2010

Home Page (No longer functional!)

Prerequisites

Java

Installation

1. $ cd /programinstallers/
2. $ wget -N http://genomics.research.iasma.it/download_data/HarryPlotter.zip
   Server no longer exists. Local copy of file HarryPlotter.zip 421,258 bytes Jan 12, 2011
3. $ mkdir /usr/local/bin/harryplotter
4. $ cd /usr/local/bin/harryplotter
5. $ unzip /programinstallers/HarryPlotter.zip
   

   Archive:  /programinstallers/HarryPlotter.zip
     inflating: HarryPlotter2.jar       
     inflating: harry_plotter_doc.pdf   
     inflating: heatmap.txt             
      creating: lib/
     inflating: lib/appframework-1.0.3.jar  
     inflating: lib/swing-worker-1.1.jar  
     inflating: lod.txt                 
     inflating: marker.txt              
     inflating: metacontig.txt          
     inflating: README.TXT

6. $ mkdir web/programs/harryplotter
7. $ cp -puv README.TXT harry_plotter_doc.pdf web/programs/harryplotter/
8. Make a launcher
   $ sudo nano /usr/share/applications/Bioinformatics/HarryPlotter.desktop
9. Add this text:
   

   #!/usr/bin/env xdg-open
   
   [Desktop Entry]
   Version=1.0
   Type=Application
   Terminal=false
   Exec=java -jar /usr/local/bin/harryplotter/HarryPlotter2.jar
   Path=/usr/local/bin/harryplotter
   Name=Harry Plottter
   Comment=Plot Chromosome vs. Linkage Map
   Icon=/
   Categories=Bioinformatics