Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Monday, 25-Aug-2014 08:17:37 CDT

Installation notes for GMAP and GSNAP version 2014-08-20

Home Page

Prerequisites

None

Installation

  1. $ ver="2014-08-20"
  2. $ cd /programinstallers/
  3. $ wget -N http://research-pub.gene.com/gmap/src/gmap-gsnap-$ver.tar.gz
  4. $ tar -zxvf gmap-gsnap-$ver.tar.gz
  5. $ cd gmap-$ver
  6. $ ./configure
  7. $ make
  8. $ sudo make install
  9. Cleanup
    $ cd .. ; rm gmap-$ver -rf