Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

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Installation notes for GapFiller version 1-10

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Prerequisites

Perl

Installation

  1. $ ver="v1-10"
  2. Program is obtained on request from BASECLEAR, GapFiller_v1-10_linux-x86_64.tar.gz
  3. $ cd /usr/local/bin
  4. $ tar -zxvf /programinstallers/GapFiller_${ver}_linux-x86_64.tar.gz
  5. Create a version-indipendent symlink
    $ ln -s GapFiller_${ver}_linux-x86_64 GapFiller
  6. Add to default PATH
    $ sudo nano /etc/profile
    …
    PATH="$PATH:/usr/local/bin/GapFiller"
    …
  7. The executable is GapFiller.pl