Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Tuesday, 17-Feb-2015 10:34:55 CST

Installation notes for FUNC version 0.4.7

Home Page

Prerequisites

https://func.eva.mpg.de/download.html

Installation

  1. $ ver="0.4.7"
  2. $ cd /programinstallers/
  3. $ wget -N https://func.eva.mpg.de/func-$ver.tar.gz
  4. $ tar -zxvf func-$ver.tar.gz
  5. $ cd func-$ver/src
  6. $ ./configure
  7. $ make
  8. $ sudo make install
    …
    /usr/bin/install -m 755 func_hyper /usr/local/bin
/usr/bin/install -m 755 func_mtc /usr/local/bin
/usr/bin/install -m 755 func_wilcoxon /usr/local/bin
/usr/bin/install -m 755 func_binom /usr/local/bin
/usr/bin/install -m 755 func_2x2contingency /usr/local/bin
/usr/bin/install -m 755 func_separate_taxonomies_embl.pl /usr/local/bin
/usr/bin/install -m 755 func_category_statistics.pl /usr/local/bin
/usr/bin/install -m 755 func_category_groups.pl /usr/local/bin
make[1]: Leaving directory `/programinstallers/func-0.4.7/src/tools'
/usr/bin/install -d /usr/local/doc
/usr/bin/install -d /usr/local/doc/func-0.4.7
make[1]: Entering directory `/programinstallers/func-0.4.7/src/doc'
/usr/bin/install -d /usr/local/doc/func-0.4.7/
/usr/bin/install -m 644 func.ps func-refin.ps func.html func-refin.html /usr/local/doc/func-0.4.7/
/usr/bin/install -m 644 func.1 /usr/local/share/man/man1/
/usr/bin/install -m 644 func-refin.1 /usr/local/share/man/man1/
/usr/bin/install -m 644 ../../README /usr/local/doc/func-0.4.7/
/usr/bin/install -m 644 ../../INSTALL /usr/local/doc/func-0.4.7/
/usr/bin/install -m 644 ../../COPYING /usr/local/doc/func-0.4.7/
/usr/bin/install -m 644 ../../AUTHORS /usr/local/doc/func-0.4.7/
make[1]: Leaving directory `/programinstallers/func-0.4.7/src/doc'
  9. Copy some files to local web page
    $ cd ..
  10. $ cp -puv /usr/local/doc/func-0.4.7/*.html /programinstallers/web/func/
  11. $ cp -puv README /programinstallers/web/func/README.txt
  12. Cleanup
    $ cd /programinstallers
  13. $ rm func-$ver -rf
  14. Install the GO data tables
    $ sudo mkdir /usr/local/share/geneontology && sudo chmod 777 /usr/local/share/geneontology
  15. $ cd /usr/local/share/geneontology
  16. $ wget -N http://archive.geneontology.org/full/2015-02-01/go_201502-termdb-tables.tar.gz
  17. $ tar -zxvf go_201502-termdb-tables.tar.gz
  18. $ rm go_201502-termdb-tables.tar.gz