This page was last updated on Wednesday, 22-Jan-2014 16:11:25 CST

Installation notes for ESTScan version 3.0.3 2009-06-17

Home Page

Prerequisites

• g77
  1. $ sudo yum install compat-gcc-34-g77
• BTLib
  1. $ cd /programinstallers/
  2. $ wget -N http://downloads.sourceforge.net/project/estscan/BTLib/0.19/BTLib-0.19.tar.gz
  3. $ tar -zxvf BTLib-0.19.tar.gz
  4. $ cd BTLib-0.19
  5. $ perl Makefile.PL
     Checking if your kit is complete...
     Looks good
     Writing Makefile for BTLib
     Writing MYMETA.yml and MYMETA.json
  6. $ make
  7. $ sudo make install
  8. $ cd ..
  9. $ rm BTLib-0.19 -rf

Installation

1. $ cd /programinstallers/
2. $ wget -N http://downloads.sourceforge.net/project/estscan/estscan/3.0.3/estscan-3.0.3.tar.gz
3. $ tar -zxvf estscan-3.0.3.tar.gz
4. $ cd estscan-3.0.3
5. $ make
6. Manual installation
   $ mkdir /usr/local/bin/estscan
7. $ cp -puv extract_UG_EST extract_EST evaluate_model build_model extract_mRNA prepare_data maskred makesmat estscan winsegshuffle build_model_utils.pl /usr/local/bin/estscan/
8. Add to default PATH
   $ sudo nano /etc/profile
   ...
   PATH="$PATH:/usr/local/bin/estscan"
   ...
9. Cleanup
   $ cd ..
10. $ rm estscan-3.0.3 -rf