Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

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Installation notes for dd_detection version Version 0.2.5, June 4 2013 commit 1bc2eb8 2015-10-08

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Prerequisites

git

  1. $ sudo apt-get install git

samtools version 0.1.x

Installation

  1. $ ver="1bc2eb8"
  2. $ cd /programinstallers/
  3. $ git clone https://bitbucket.org/mkroon/dd_detection.git
  4. $ cd dd_detection
  5. $ make SAMTOOLS=/usr/lib/samtools
  6. Manual installation
    $ sudo cp -puv src/dd_detection /usr/local/bin/
  7. $ cd ..
  8. Cleanup
    $ rm dd_detection -rf