Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

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Installation notes for blobology version xxx

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Prerequisites

See https://github.com/blaxterlab/blobology Installation

Installation

  1. $ cd /programinstallers/
  2. $ cd /usr/local/bin
  3. $ git clone https://github.com/blaxterlab/blobology.git
  4. $ rm blobology/.git -rf
  5. Add to default PATH
    $ sudo nano /etc/profile

    PATH="$PATH:/usr/local/bin/blobology"
  6. For the taxdump prerequisite
    $ cd /usr/local/bin/bloboloty
  7. $ wget ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz
  8. $ tar -zxvf taxdump.tar.gz nodes.dmp names.dmp
  9. $ rm taxdump.tar.gz