This page was last updated on Saturday, 19-Nov-2016 15:54:00 CST

Installation notes for bfast version 0.7.0a

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Prerequisites

Installation

1. $ ver=""
2. $ cd /programinstallers/
3. $ git clone git://bfast.git.sourceforge.net/gitroot/bfast/bfast
4. $ cd bfast
5. $ sh autogen.sh
6. $ ./configure
7. $ make
8. Ubuntu 16.04 two header files had inline functions declared that did not match code in .c file, remove "inline" from
   inline char ToUpper(char);
   in bfast/BLib.h
   and twice from
   inline int32_t ScoringMatrixGetNTScore(char, char, ScoringMatrix*);
   inline int32_t ScoringMatrixGetColorScore(char, char, ScoringMatrix*);
   in bfast/ScoringMatrix.h
9. $ make install
10. Error installing docs
    test -z "/usr/local/share/doc/bfast" || /bin/mkdir -p "/usr/local/share/doc/bfast"
    /bin/mkdir: cannot create directory `/usr/local/share/doc': Permission denied
    so do this
    $ sudo mkdir /usr/local/share/doc && sudo chmod 777 /usr/local/share/doc
4
11. Copy the utility programs too
    $ cp -pu /programinstallers/bfast/butil/btestindexes /usr/local/bin/
    There are some other utilities I did not copy