This page was last updated on Wednesday, 12-Apr-2017 13:03:02 CDT

Installation notes for BEAST version 1.8.4

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Prerequisites

BEAGLE (beagle-lib)

Installation

1. $ ver="1.8.4"
2. $ cd /programinstallers/
3. $ wget -N https://github.com/beast-dev/beast-mcmc/releases/download/v$ver/BEASTv$ver.tgz
4. $ cd /usr/local/bin
5. $ tar -zxvf /programinstallers/BEASTv$ver.tgz
6. Make a version-independent symlink
   $ ln -s BEASTv$ver BEAST
7. Add to default PATH
   $ sudo nano /etc/profile
   …
   PATH="$PATH:/usr/local/bin/BEAST/bin"
   …
8. Test beagle library
   
9. $ beast -beagle_info
   …
   

   Using BEAGLE library v2.1.2 for accelerated, parallel likelihood evaluation
   2009-2013, BEAGLE Working Group - http://beagle-lib.googlecode.com/
   Citation: Ayres et al (2012) Systematic Biology 61: 170-173 | doi:10.1093/sysbio/syr100
   
   
   BEAGLE resources available:
   0 : CPU
       Flags: PRECISION_SINGLE PRECISION_DOUBLE COMPUTATION_SYNCH EIGEN_REAL EIGEN_COMPLEX SCALING_MANUAL SCALING_AUTO SCALING_ALWAYS SCALERS_RAW SCALERS_LOG VECTOR_SSE VECTOR_NONE THREADING_NONE PROCESSOR_CPU FRAMEWORK_CPU