Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

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Installation notes for Beagle 4.0 (r1399)

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Prerequisites

Java SE version 7

Installation

  1. version 4.0 $ ver="r1399"
  2. version 4.1 $ ver="27Jul16.86a"
  3. $ cd /programinstallers/
  4. $ wget -N http://faculty.washington.edu/browning/beagle/beagle.$ver.jar
  5. Manual installation
    $ mv beagle.$ver.jar /usr/local/bin/
  6. $ cd /usr/local/bin
  7. $ ln -s beagle.$ver.jar beagle.jar
  8. Creation of a wrapper script
  9. $ nano beagle
    #!/bin/bash
    java -jar /usr/local/bin/beagle.jar $@
  10. $ chmod +x beagle