Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Thursday, 15-Dec-2016 11:51:57 CST

Installation notes for BBmap version 36.71

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Prerequisites

Java 6 or 7

Installation

  1. $ cd /programinstallers/
  2. $ ver="36.71"
  3. $ wget -N http://downloads.sourceforge.net/project/bbmap/BBMap_$ver.tar.gz
  4. $ cd /usr/local/bin
  5. $ sudo tar -zxvf /programinstallers/BBMap_$ver.tar.gz
  6. $ sudo mv bbmap bbmap-$ver
  7. $ sudo rm -f bbmap ; sudo ln -s bbmap-$ver bbmap
  8. Add to default PATH
    $ sudo nano /etc/profile
    ...
    PATH="$PATH:/usr/local/bin/bbmap"
    ...