Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Thursday, 18-Dec-2014 15:44:10 CST

Installation notes for SOAPec version 2.01

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Prerequisites

None

Installation

  1. $ ver="v2.01"
  2. $ cd /programinstallers/
  3. $ wget -N http://downloads.sourceforge.net/project/soapdenovo2/ErrorCorrection/SOAPec_$ver.tar.gz
  4. $ tar -zxvf SOAPec_$ver.tar.gz
  5. $ cp -puv SOAPec_$ver/bin/* /usr/local/bin/SOAP/
    `SOAPec_v2.01/bin/Corrector_AR' -> `/usr/local/bin/Corrector_AR'
    `SOAPec_v2.01/bin/Corrector_HA' -> `/usr/local/bin/Corrector_HA'
    `SOAPec_v2.01/bin/KmerFreq_AR' -> `/usr/local/bin/KmerFreq_AR'
    `SOAPec_v2.01/bin/KmerFreq_HA' -> `/usr/local/bin/KmerFreq_HA'
  6. Cleanup
    $ rm SOAPec_$ver -rf