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Run FGAP
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run_fgap.sh <MCR instalation folder> -d <draft file> -a <dataset(s) file(s)> [parameters]

Ex. Sample data:
./run_fgap.sh /home/user/MCR/v717/ -d sample_data/DRAFT_ecoli_hiseq454.fasta -a "sample_data/DATASET_ecoli_hiseq.fasta,sample_data/DATASET_ecoli_454.fasta" -b blast/

For more details:
./run_fgap.sh /home/user/MCR/v717/ --help