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chr - mt mt 0 360271 powderblue
segdup00001 mt 173327 317876 segdup00001 mt 3294 147844 segdup00002 mt 345349 348953 segdup00002 mt 3605 1 segdup00003 mt 345349 345660 segdup00003 mt 173637 173327...
mt 101064 120791 nad5 color=black mt 1124 3408 nad5 color=black mt 431 778 orf115b color=black mt 26567 26953 nad1 color=black mt 333722 334921 nad1 color=black mt 3623 7388 nad1 color=black...
mt 26567 26953 color=blue mt 333722 334921 color=blue mt 3623 7388 color=blue mt 15354 15434 color=blue mt 16102 16548 color=blue mt 19880 20278 color=blue...
mt 101064 120791 color=firebrick mt 1124 3408 color=firebrick mt 431 778 color=firebrick mt 4661 6694 color=firebrick mt 7626 8105 color=firebrick mt 8163 8648 color=firebrick...
file_delim = \t <colors> <<include bb.colors.conf>> </colors> # colors from http://www.w3schools.com/html/html_colornames.asp # which are the same as those used by bb.drawseq <fonts> <<include fonts.conf>> </fonts> <<include bb.ideogram.conf>> <<include bb.ticks.conf>> karyotype = "31.Brassica oleracea.main.data" <image> dir = . file = "31.Brassica oleracea.png" # radius of inscribed circle in image radius = 1200p background = white # by default angle=0 is at 3 o'clock position angle_offset = -90 24bit = yes auto_alpha_colors = yes auto_alpha_steps = 5 </image> chromosomes_units = 1000 #spacing=1u # right side;left side abbreviations chromosomes = mt chromosomes_display_default = no chromosomes_radius = mt:1.0r # Links (bezier curves or straight lines) are defined in <links> blocks. # Each link data set is defined within a <link>. # As with highlights, parameters defined # in the root of <links> affect all data sets and are considered # global settings. Individual parameters value can be refined by # values defined within <link> blocks, or additionally on each # data line within the input file. <links> z = 0 radius = 1.00r bezier_radius = 0r <link file1> z = 4; show = yes ribbon = yes color = blue_a3 thickness = 1 file = "31.Brassica oleracea.data" record_limit = 5000 <rules> </rules> </link> </links> <plots> <plot> show = yes type = tile file = 31.Brassica oleracea.genes.1.forward #layers = 15 layers = 1 layers_overflow = collapse margin = 0.02u thickness = 30 padding = 8 orientation = out stroke_thickness = 0 #stroke_color = none color = mediumblue r0 = 1r r1 = 1.2r z = 9 background = no </plot> <plot> show = yes type = tile file = 31.Brassica oleracea.genes.1.reverse #layers = 15 layers = 1 layers_overflow = collapse margin = 0.02u thickness = 30 padding = 8 orientation = in stroke_thickness = 0 #stroke_color = none color = firebrick r0 = 0.8r r1 = 1r z = 10 background = no </plot> <plot> show = yes type = text file = 31.Brassica oleracea.genes.1.labels color = black r0 = 1.00r r1 = 1.20r show_links = yes link_dims = 4p,30p,64p,4p,4p link_thickness = 2p link_color = black # set label font size here label_size = 12p label_font = condensed padding = 0p rpadding = 0p label_snuggle = yes # shift label up to its height in pixels in the angular direction max_snuggle_distance = 25r snuggle_sampling = 2 snuggle_tolerance = 0.25r snuggle_link_overlap_test = yes snuggle_link_overlap_tolerance = 2p snuggle_refine = yes </plot> </plots> anglestep = 0.5 minslicestep = 10 beziersamples = 1000 debug = no warnings = no imagemap = no # don't touch! units_ok = bupr units_nounit = n