USDA ARS VCRU Data Server This web site, https://www.vcru.wisc.edu/sdata, contains data from the laboratory of Philipp W. Simon, USDA-ARS Vegetable Crops Research Unit [Click here for our web page]

This page was last updated on Thursday, 18-Jun-2020 10:01:58 CDT

Index

• Markers and Genetic Linkage Maps
• Published Data
• Sequence Databases
• Apiaceae Public Databases
• Alliaceae Public Databases
• Other Links

Markers and Genetic Linkage Maps

• Marker Methods for published markers
• Carrot Linkage Maps
1. 9304×7262 Linkage Map (B.S. Vivek) 103 F₂ individuals
2. Brasilia 1252×B6274 RAPD Linkage Map (Leonardo Boiteux - Ph.D. Thesis) 442 F₂ individuals
3. Brasilia 1252×B6274 AFLP Linkage Map (Leonardo Boiteux - Ph.D. Thesis) 188 F₂ individuals
4. Brasilia 1252×B6274 RAPD STS Linkage Map (Leonardo Boiteux - Ph.D. Thesis) 112 F₂ individuals
5. Brasilia 1252×B6274 RAPD Linkage Map (Leonardo Boiteux - Published) 412 F₂ individuals
6. B493×QAL Linkage Map v.1 (Carlos Santos) 183 F₂ individuals
7. BSB×HCM Linkage Map (Carlos Santos) 160 F₂ individuals
8. B493×QAL and BSB×HCM Merged Linkage Map (Carlos Santos)
9. B493×QAL Linkage Map v.2 with carotenoid genes (Brian Just) 183 F₂ individuals
10. B493×QAL Linkage Map v.3 with transposon display markers (Dariusz Grzebelus) 159 F₂ individuals
11. B493×QAL Linkage Map v.4 with SSR markers (Pablo Cavagnaro) 103 F₂ individuals
12. Criolla INTA×biennial placeholder
13. 10117 Linkage Map (Anthocyanin) 72 F₂ individuals
14. 70394 DArT Linkage Map 188 F₂ individuals
15. Mj-2 Linkage Map
• Garlic Linkage Maps
1. Garlic Linkage Map 1 (Meryem Ipek) 53 F₁ individuals
2. Garlic Linkage Map 2 (Meryem Ipek) 53 F₁ individuals
• Cucurbit Linkage Maps
1. 846-1 × Top Mark Melon Linkage Map 81 RIL (F₆) lines

Published Data

• Carrot Genome Resources
• Published Images
• Genes and Biochemical Pathways
• Published DNA sequences from our laboratory
• Software available from our laboratory
• P.W. Simon complete publication list
• Released Carrot Lines
• Miscellaneous Data
• Carrot Trial Results

Sequence Databases

• Graphs of the number of sequences available in NCBI's GenBank databases, starting March 31, 2011.
• RefSeq database
• Download RefSeq Plant

Apiaceae Public Databases

• RoBuST - Root and Bulb Genomics Database
• National Plant Germplasm System (including GRIN)
• Accession Area Queries = search for PI number, AMES number, etc.
• Simple Taxonomy Queries = search for genus, species, etc.
• Advanced Taxonomy Queries = search for genus, species, etc.
• Families and Genera Queries = Return a list of genera within a family
• Search Characterization/Evaluation Data
• Plant Gene Resources of Canada (GRIN-CA)
• Advanced Taxonomy Queries = search for genus, species, etc., make sure to check the "Restrict to names with germplasm in GRIN-CA" box
• Hardcoded link to Apiaceae search
• The ECP/GR Umbellifer Database = Downloadable database, no on-line searching
• System-wide Information Network for Genetic Resources (SINGER)
• Genus-species search (cannot search by family)
• Genus listing

Alliaceae Public Databases

• RoBuST - Root and Bulb Genomics Database
• National Plant Germplasm System (including GRIN)
• Accession Area Queries = search for PI number, AMES number, etc.
• Simple Taxonomy Queries = search for genus, species, etc.
• Advanced Taxonomy Queries = search for genus, species, etc.
• Families and Genera Queries = Return a list of genera within a family
• hardcoded link to Alliaceae search
• Trait Queries on a Genus/species level, specific traits may be examined
• Plant Gene Resources of Canada (GRIN-CA)
• Advanced Taxonomy Queries = search for genus, species, etc., make sure to check the "Restrict to names with germplasm in GRIN-CA" box
• Hardcoded link to Alliaceae search
• The ECP/GR Allium Database = Downloadable database, no on-line searching
• System-wide Information Network for Genetic Resources (SINGER)
• Genus-species search (cannot search by family)
• Genus listing
• GarlicESTdb: an online database and mining tool for garlic EST sequences
• DFCI A.cepa Gene Index
• IPK Garlic and Shallot Core Collection
• IPK Garlic and Shallot Core Collection (alternate link)

Other Links

• NCBI Taxonomy of Daucus carota
• EuSplice
• NCBI-Genbank etc.
• NCBI Map Viewer
• RAPDs - Operon And BC Primer Sequences (Excel Worksheet)