Usage: sga merge [OPTION] ... READS1 READS2
Merge the sequence files READS1, READS2 into a single file/index

  -v, --verbose                        display verbose output
      --help                           display this help and exit
  -t, --threads=NUM                    use NUM threads to merge the indices (default: 1)
  -p, --prefix=PREFIX                  write final index to files starting with PREFIX (the default is to concatenate the input filenames)
  -r, --remove                         remove the original BWT, SAI and reads files after the merge
  -g, --gap-array=N                    use N bits of storage for each element of the gap array. Acceptable values are 4,8,16 or 32. Lower
                                       values can substantially reduce the amount of memory required at the cost of less predictable memory usage.
                                       When this value is set to 32, the memory requirement is essentially deterministic and requires ~5N bytes where
                                       N is the size of the FM-index of READS2.
                                       The default value is 4.

Report bugs to js18@sanger.ac.uk