Usage: sga gen-ssa [OPTION] ... READSFILE
Build a sampled suffix array for the reads in READSFILE using the BWT

  -v, --verbose                        display verbose output
      --help                           display this help and exit
  -t, --threads=NUM                    use NUM threads to construct the index (default: 1)
  -c, --check                          validate that the suffix array/bwt is correct

Report bugs to js18@sanger.ac.uk